14 Aug
2011
14 Aug
'11
6:52 p.m.
Well, sort of. After converting that GFF3 file into BED, the strand column isn't set in the metadata. That seems important!
We'll look into this.
Also a point of clarification, I had the wrong URL for the FASTA file.
This is the whole genome, although to actually proceed with this example, the sequence must be renamed to just NC_005213.1 rather than the NCBI's gi|38349555|ref|NC_005213.1| in order to match the naming in the GFF file. ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Nanoarchaeum_equitans_Kin4_M_uid58009/NC_005213.fna
Correct. J.