xue dong wrote:
I also installed Galaxy, if i understand correctly, Galaxy has the link to UCSC so the user can get data from UCSC. since what i interested is arabidopsis information, I hope Galaxy can retrive data form the locally installed UCSC in future. I do not know if it is possible to make this idea come ture.maybe some of you have done it. if yes, I am gratefully if you can tell me the how to get it.
Hi Xue,
Sorry for the long delay in response. This can be done by copying the existing UCSC tool config (tools/data_source/ucsc_tablebrowser.xml) and changing the url to your local url:
<inputs action="http://genome.ucsc.edu/cgi-bin/hgTables" check_values="false" method="get">
Then add this new copy of the tool config to your tool_conf.xml.
--nate