xue dong wrote:
I also installed Galaxy, if i understand correctly, Galaxy has the link to UCSC so the user can get data from UCSC. since what i interested is arabidopsis information, I hope Galaxy can retrive data form the locally installed UCSC in future. I do not know if it is possible to make this idea come ture.maybe some of you have done it. if yes, I am gratefully if you can tell me the how to get it.
Sorry for the long delay in response. This can be done by copying the existing UCSC tool config (tools/data_source/ucsc_tablebrowser.xml) and changing the url to your local url:
<inputs action="http://genome.ucsc.edu/cgi-bin/hgTables" check_values="false" method="get">
Then add this new copy of the tool config to your tool_conf.xml.