Hi Bjorn, here's what I have:
<collection type="list" label="CrossSample on ${input.name}" name="output"> <discover_datasets pattern="(?P<name>.*)" directory="crossSampleOutputs" /> </collection>
I tried this among other things:
<collection type="list" label="CrossSample on ${input.name}" name="output" format_source="input"> </collection>
I'll try your example. Thank you!
On Fri, Jul 29, 2016 at 3:21 PM, Björn Grüning bjoern.gruening@gmail.com wrote:
Hi Cristel,
can you share some code. If you use discover_datasets like this, format="" should indeed work.
<discover_datasets pattern=".*?.(?P<designation>.*).sharedotus" format="tabular"/>
Another feature is that the filetype is extracted from the extension if you use it like this:
https://github.com/bgruening/galaxytools/blob/master/tools/text_processing/s...
Ciao, Bjoern
Hello galaxy developers,
how do you set the format for datasets in output dataset collections? I looked at some xmls from John Chilton, and tried using format_source="input", or inherit_format="true". Those unfortunately do not work. I also naively tried format="txt" to no avail.
I can't find anything in the documentation. Can someone point me in the right direction?
Thanks much, Cris
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