On Wed, Nov 19, 2014 at 12:58 PM, Misharl Monsoor
Hi John ,
First all, thank you very much for your quick reply. I will test your
suggestion about pycurl, and tell you if it has worked. For the second
question, i was wondering if it is possible with LWR to define a path (where
are located the inputs) as an input (string input in the wrapper xml).
Still not certain I understand - but I do not believe this is possible
for datasets - this is something that must be configured for the LWR
itself. If you have inputs to the tool that are not datasets - such as
reference or index data - those could potentially be specified this
way as just <data type="text"... in your tool. Those parameters will
be passed through on the command-line just like any other parameter.
Hope this helps.
Thank you again for your help,
Le 19/11/2014 15:30, John Chilton a écrit :
> If you install pycurl (globally or in a Galaxy's virtualenv) and set
> LWR_CURL_TRANSPORT=1 in Galaxy's environment than the LWR will stream
> large files with CURL instead of the mmap hack.
> I don't understand your second question - the LWR should stream
> whatever data inputs are selected by the user. If you want the tool to
> be able to take many inputs you can use multiple="true" on your data
> parameter or use a repeat block.
> Hope this helps,
> On Mon, Nov 17, 2014 at 3:04 AM, Misharl Monsoor <mmonsoor(a)sb-roscoff.fr>
>> Hi everybody,
>> In our lab, we are trying to connect our Galaxy instance to a Windows 7
>> bits server, in order to executes programs that need to be run within
>> Windows. However we have a problem concerning the size of the input that
>> uploaded to the Windows server, it doesn't accept inputs with a size >
>> Gb ? We have the following problem with mmap function:
>> data = mmap.mmap(input.fileno(), 0, access=mmap.ACCESS_READ)
>> error: [Errno 12] Cannot allocate memory
>> I have another question concerning the inputs, is there a way to use
>> inputs that be uploaded to a Windows Server?
>> Thank you very much in advance,
>> Bests regards,
>> Misharl Monsoor
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