On Tue, Aug 12, 2014 at 3:03 AM, Juan Vladimir de la Rosa Medina < jvdelarosa@hotmail.com> wrote:
Hi everyone,
I recently have installed a local instance of galaxy in my computer, everything worked fine until I changed the path for *library_import_dir* in the *universe_wsgi.ini* file, to upload files to data libraries. I followed the Galaxy documentation to setup this feature:
This is the path in the *universe_wsgi.ini* file *library_import_dir = /media/New/Vladimir/My_RNA-seq/*
The steps I followed are: *Admin > Data Library > Create new data library > Add datasets > Upload directory of files* file format was set to *auto-detect* server Directory was */media/New/Vladimir/My_RNA-seq/* and we chose the option to *link to files* instead of copying them
When I try to upload files, galaxy displays the following error:
*Error Traceback:*
*⇝ AttributeError: 'NoneType' object has no attribute 'new_state'*
Juan,
A bit of a guess here - have you removed the upload tool from your tool_conf.xml?
--nate
*<?xml version="1.0" ?><traceback> <sysinfo> <language version="2.7.3">Python</language> </sysinfo> <stack> <frame> <module>weberror.evalexception.middleware</module> <filename>/home/labinmunologiaulpgc/galaxy-dist/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py</filename> <line>364</line> <function>respond</function> <operation>app_iter = self.application(environ, detect_start_response)</operation> <operation_context> try: __traceback_supplement__ = errormiddleware.Supplement, self, environ app_iter = self.application(environ, detect_start_response) try: return_iter = list(app_iter) </operation_context> </frame> <frame> <module>paste.recursive</module> <filename>/home/labinmunologiaulpgc/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py</filename> <line>84</line> <function>__call__</function> <operation>return self.application(environ, start_response)</operation> <operation_context> environ['paste.recursive.script_name'] = my_script_name try: return self.application(environ, start_response) except ForwardRequestException, e: middleware = CheckForRecursionMiddleware(</operation_context> </frame>
<frame> <module>paste.httpexceptions</module> <filename>/home/labinmunologiaulpgc/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py <http://httpexceptions.py/></filename> <line>633</line> <function>__call__</function> <operation>return self.application(environ, start_response)</operation> <operation_context> []).append(HTTPException) try: return self.application(environ, start_response) except HTTPException, exc: return exc(environ, start_response)</operation_context> </frame> <frame> <module>galaxy.web.framework.base</module> <filename>/home/labinmunologiaulpgc/galaxy-dist/lib/galaxy/web/framework/base.py</filename> <line>132</line> <function>__call__</function> <operation>return self.handle_request( environ, start_response )</operation> <operation_context> self.trace( message="Starting request" ) try: return self.handle_request( environ, start_response ) finally: self.trace( message="Handle request finished" )</operation_context> </frame> <frame> <module>galaxy.web.framework.base</module> <filename>/home/labinmunologiaulpgc/galaxy-dist/lib/galaxy/web/framework/base.py</filename> <line>190</line> <function>handle_request</function> <operation>body = method( trans, **kwargs )</operation> <operation_context> kwargs.pop( '_', None ) try: body = method( trans, **kwargs ) except Exception, e: body = self.handle_controller_exception( e, trans, **kwargs )</operation_context> </frame> <frame> <module>galaxy.webapps.galaxy.controllers.library_common</module>
<filename>/home/labinmunologiaulpgc/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/library_common.py</filename> <line>927</line> <function>upload_library_dataset</function> <operation>**kwd )</operation>
<operation_context> widgets=widgets,
replace_dataset=replace_dataset, **kwd ) if created_outputs_dict: if cntrller == 'api':</operation_context> </frame> <frame> <module>galaxy.webapps.galaxy.controllers.library_common</module>
<filename>/home/labinmunologiaulpgc/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/library_common.py</filename> <line>1049</line> <function>upload_dataset</function> <operation>state = tool.new_state( trans )</operation> <operation_context> tool_id = 'upload1' tool = trans.app.toolbox.get_tool( tool_id ) state = tool.new_state( trans ) errors = tool.update_state( trans, tool.inputs_by_page[0], state.inputs, kwd ) tool_params = state.inputs</operation_context> </frame> </stack> <exception> <type>AttributeError</type> <value>'NoneType' object has no attribute 'new_state'</value> </exception></traceback>*
I have been looking for a solution to fix this problem on the web without success.
thank you very much
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/