Hi Jeremy,
After checking, the two js scripts are absent from the release:
backbone-relational.js ( static/scripts/packed/libs/backbone/ ) galaxy.utils.js ( static/scripts/packed/utils/ )
bw
C
On 25 Mar 2014, at 16:16, Shu-Yi Su wrote:
Hi Jeremy,
Thank you very much for the reply.
Yes, we are running on galaxy-dist, and manually pulled to update our installation. The release version is vrelease_2014.02.10--2--29ce93a13ac7. I have tried safari and firefox. Both are not working. Here is the error massage from console: [Error] Failed to load resource: the server responded with a status of 404 (Not Found) (backbone-relational.js, line 0) [Error] Failed to load resource: the server responded with a status of 404 (Not Found) (galaxy.utils.js, line 0) [Error] Error: Script error for: libs/backbone/backbone-relational http://requirejs.org/docs/errors.html#scripterror defaultOnError (require.js, line 1) onError (require.js, line 1) onScriptError (require.js, line 1) [Error] Error: Script error for: utils/galaxy.utils http://requirejs.org/docs/errors.html#scripterror defaultOnError (require.js, line 1) onError (require.js, line 1) onScriptError (require.js, line 1);;;
We are also wondering if there is anything we didn't set up probably for our universe_wsgi.ini file.
Thank you.
Best, Shu-Yi
On Mar 25, 2014, at 4:05 PM, Jeremy Goecks wrote:
Providing some additional information will help diagnose the problem:
*are you running galaxy-dist? If so, have you manually pulled and applied commits from galaxy-central? If so, which ones? *which Web browser are you using? *can you please open the JavaScript console in your browser and provide any errors that you see?
Thanks, J.
-- Jeremy Goecks Assistant Professor of Computational Biology George Washington University
On Mar 24, 2014, at 11:38 AM, Shu-Yi Su shu-yi.su@embl.de wrote:
Hi all,
We have recently updated our local Galaxy installation to vrelease_2014.02.10--2--29ce93a13ac7 (database version is 118). I found that the Trackster is not working. I have checked the latest commits related to Trackster bugs. So i have updated theses files: ./static/scripts/viz/trackster.js (commits date: 2014-02-28) ./static/scripts/viz/trackster_ui.js (commits date: 2014-02-28) ./static/scripts/viz/trackster/tracks.js (commits date: 2014-03-16) ./static/scripts/utils/utils.js (commits date: 2014-03-19) ./static/scripts/utils/config.js (commits date: 2014-03-15)
But, it is still not working. I have tried different format…bam, bed, sam….all are not working. I looked into all possible files I can think about that might cause the problems but still don't have any clues. I also looked into the log, and there is no error, but i noticed that there is difference from the log where the trackster was working in previous installation. The log where the trackster is not working:
- "GET /galaxy-dev/visualization/trackster?dataset_id=f04ecb1d3d259245&hda_ldda=hda
The log where the trackster is working (from the old installation):
- "GET /galaxy/visualization/trackster?dataset_id=5d38b380cba2f4a6&hda_ldda=hda……
- "GET /galaxy/api/datasets/5d38b380cba2f4a6?hda_ldda=hda&data_type=converted_datasets_state….
- "GET /galaxy/api/datasets/5d38b380cba2f4a6?data_type=data&chrom=chr2L…..
It looks like that the trackster in new version of Galaxy does not execute the second and the third steps.
Here is the screen shot when i clicked "View in new visualization" (there is nothing shown up---blank)
Any ideas or suggestions are appreciated.
Thank you very much.
Best, Shu-Yi
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