Hi Matthias,
Can you verify that the file is recognized as 'sif'-file in the Galaxy history and not as 'txt'-file? Please change the format if necessary.
I hope this helps, Sam
On Wed, Apr 5, 2017 at 7:01 AM, Matthias Bernt m.bernt@ufz.de wrote:
Dear galaxy-dev,
I just wanted to test the exciting cytoscape charts plugin that was just announced: https://github.com/galaxyproject/galaxy/pull/3817
So I created a small sif file
nodeA xx nodeB nodeB xx nodeC nodeC xx nodeD nodeD xx nodeA nodeB xx nodeD
I guess I have to click the "Visualize" button of the data set where I have the options "Charts" and "Graph Visualizations". The former has only oine option: Multiple Sequence Alignment (BioJS). So I guess its the latter which shows me a graph. But it looks different to the example in the pull request, e.g. node names are not shown and I can not interact as shown in the three figures.
Is there some docomentation that I could read. In general I would be interested to read about the Charts.
Would be grateful about some pointers.
Cheers, Matthias
--
Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de
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