Hello,
I installed clustalomega from the galaxy main toolshed using the admin interface of our local galaxy install. When I run the tool, I get this message:
Dataset generation errors Dataset 55: co_alignment.fasta
Tool execution generated the following error message: Error invoking command: clustalo --force --threads=1 --maxnumseq=300000 --maxseqlen=15000 -o /opt/galaxy-dist/database/files/000/dataset_158.dat -l /opt/galaxy-dist/database/files/000/dataset_159.dat -v -i /opt/galaxy-dist/database/files/000/dataset_153.dat
[Errno 2] No such file or directory
I've tried reloading my input file, reloading the tool's configuration, resetting the metadata on the clustalomega repository, deleting the tool completely and re-installing. No luck. If I try to rerun the job again, I get non-sensical errors that seem to originate from other tools, as if the database was completely garbled. Each of those tools work fine. Only clustalomega behaves oddly.
I have no access to our galaxy server, so any solution would have to be implemented from the admin interface.
thanks for any hints,
Isabelle