Peter wrote:
Hi,
I'm trying to use run_functional_tests.sh to run all the tests for a section (group of tools). I've read the output from:
./run_functional_tests.sh help
For example, from the tools_conf.xml.sample we have
<section name="ENCODE Tools" id="EncodeTools"> <tool file="encode/gencode_partition.xml" /> <tool file="encode/random_intervals.xml" /> </section>
And looking at these tools' XML files,
<tool id="gencode_partition1" name="Gencode Partition">
and:
<tool id="random_intervals1" name="Random Intervals">
I'd like to run the functional tests for the ENCODE tools, Using the switch for an individual tool id (-id) works,
./run_functional_tests.sh -id gencode_partition1 ... Ran 1 test in 22.302s ...
and so does this (well, it say the tool doesn't have any tests which is true in this example):
./run_functional_tests.sh -id random_intervals1 ... Ran 1 test in 0.027s ...
However, I also tried using the section id switch (-sid),
./run_functional_tests.sh -sid EncodeTools ... Ran 0 tests in 0.000s ...
I also tried using the section name,
/run_functional_tests.sh -sid "ENCODE Tools"
Is this (-sid not working) a known issue, or am I using it wrong?
As presently written it expects the name concatenated with the id, with spaces converted to dashes. You can see the list of valid sections by running 'python tool_list.py'. Everything after "section::" is what would follow the '-sid' flag.
--nate
Thanks,
Peter _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev