14 Jun
2017
14 Jun
'17
4:02 p.m.
Has anyone seen a similar error like this before. We are unsure if galaxy is causing the issue or it is being cuased by slurm as it seems galaxy is prematurely deleting a file. galaxy.jobs.runners DEBUG 2017-06-14 19:36:45,719 (3261/143577) Unable to cleanup /cm/shared/apps/galaxy/prod/galaxy/database/jobs_directory/003/3261/galaxy_3261.ec: [Errno 2] No such file or directory: '/cm/shared/apps/galaxy/prod/galaxy/database/jobs_directory/003/3261/galaxy_3261.ec' galaxy.jobs.output_checker DEBUG 2017-06-14 19:36:45,725 Tool produced standard error failing job - [slurmstepd: get_exit_code task 0 died by signal