Hi Jochen, Theo also opened a pull request to submit it to IUC:
https://github.com/galaxyproject/tools-iuc/pull/1366
but hasn't updated it after August 2017.
Cheers, Nicola
On 10/04/18 14:37, Jochen Bick wrote:
Hej Peter,
thanks for the quick reply. My galaxy is a release_17.05
I think the xml is also broken.
Cheers Jochen
On 10.04.2018 15:28, Peter Cock wrote:
Are you trying to install this?
https://toolshed.g2.bx.psu.edu/view/theo.collard/ballgown_wrapper/05977e9637...
If so, it does set out its requirements:
<requirements> <requirement type="package"version="2.2.0">bioconductor-ballgown</requirement> <requirement type="package" version="0.5.0">r-dplyr</requirement> <requirement type="package" version="1.3.2">r-optparse</requirement> </requirements>
However, your Galaxy would have to be using BioConda to do this. This wrapper does not include a legacy Galaxy XML file to declare its package dependencies.
What version of Galaxy do you have?
Peter
On Tue, Apr 10, 2018 at 2:16 PM, Jochen Bick jochen.bick@usys.ethz.ch wrote:
Hi,
I'm trying to install Ballgown but it throws some error message after running it:
cannot find 'dataset' while searching for 'param_name.dataset.dataset'
the script does not have test-data file and it also does not install the requirements.
Cheers Jochen
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/