Hi Brandon, Answering a couple questions will help us diagnose the issue: (a) where exactly are you seeing this error? when trying to view a shared workflow or someplace else? (b) can users currently run your tool? (this will suggest or rule out a problem with your .loc) Also, can you please provide the complete stack trace found in paster. Thanks, J. On Sep 14, 2010, at 12:41 PM, Branden Timm wrote:
Hello, I have a workflow that I've tried to share both with users and via link. Trying to use either of these methods to access the shared workflow results in a Server Error. paster.log reports:
File '/home/galaxy/galaxy_dist/lib/galaxy/tools/__init__.py', line 795 in visit_inputs callback( "", input, value[input.name] ) KeyError: 'referenceGenome'
referenceGenome is a param from one of my tool's xml configuration file. Here is the relevant section:
<param name="referenceGenome" type="select" label="Reference Genome"> <options from_file="soap_indices.loc"> <column name="name" index="1"/> <column name="value" index="2"/> </options> </param>
soap_indices.loc only contains one line currently ecoliU00096 E. Coli U00096 /home/galaxy/galaxy_dist/soap_indices/ecoli_U00096.fasta.index
I'm confused as to why I am getting this KeyError, but I suspect that perhaps I have set up my .loc file incorrectly? Any help would be greatly appreciated. Cheers
-- Branden Timm Great Lakes Bioenergy Research Center btimm@glbrc.wisc.edu
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J.