Hello!
This is more or less a repost of (several) previously unanswered questions. Sadly it seems that one does generally not recieve an answer to this topic:
http://lists.bx.psu.edu/pipermail/galaxy-user/2011-October/003400.html http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-October/007088.html http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-October/011478.html
So how do I properly set up the Gencode Partition tool (or the ENCODE tools)?
Another thing: the official galaxy instance seems to have the same problem: The tool Gencode Partition returns the error:
"Error loading partitioning dataset."
which I also experience when using the the testing-bed file from galaxy-dist/test-data/encode_1.bed
I suppose the encode_1.bed file is not the problem, right?
Another thing is the helptext defined in the XML: it points to http://genome.imim.es/gencode/wiki/index.php/Collecting_Feature_Sets_from_Al... The wiki is actually closed by password...
Best, Phil