Greetings, I have had two RNAseq files in queue to map with Top hat in Galaxy Main since last Thursday (History began Sept 19). Yesterday I got word that NGS was stalled, my jobs were mistakenly believed to be moving afterwards when they weren't- but are now under review again. This morning the 2 mapping jobs are still waiting to run. I have a data review meeting this thursday and hope you can advise me on contingency plans to get these 2 mapping jobs running.
Can you tell me whether I should delete the jobs and re-run them as new? My concern is that they are still "believed to be moving" as was indicated by one of your galaxy stewards, but are actually still stalled in space. I have a data meeting Thursday (10/4) and hoped to be ready by starting this project Sept 19th. Can you tell me if you are aware of another public Galaxy server (other than Main) with 'Top Hat' for mapping RNAseq data? I joined Cistrome (Harvard) but they only have Cufflinks (for previously mapped RNAseq analysis) below is my history thank you very much for your help https://main.g2.bx.psu.edu/u/trstueve/h/rnaseqjegcsc3wkrun130924-1 https://main.g2.bx.psu.edu/history/sharing#
Theresa Ryan Stueve 510-225-8894 (text better than voicemail for quick response)