Re: [galaxy-dev] (no subject)

Hi, Actually I am not computer expert as well. I have just started to work in this area. so I am not able to figure out how to solve this problem. I request you to elaborate on what you meant in your previous mail.

Thanks in advance > As I wrote in my previous e-mail: "Please send all follow-up with a cc to the mailing list ("reply-all")." > In order to debug you situation you need to simulate a complete > commandline, the same Galaxy is doing. > Regards, Hans > On 01/23/2012 05:35 AM, Vidya .H.K wrote: >> Hi, >> Sorry for delayed reply. When I execute "macs_wrapper.py" on command line, >> I get the following error. >> python macs_wrapper.py >> File "<stdin>", line 1 >> python macs_wrapper.py >> Thanks in advance >>> On 01/10/2012 06:31 AM, Vidya .H.K wrote: >>>> Hi, >>>> I think macs is exceutable with galaxy user. >>> what happens if you execute "macs_wrapper.py" on the command line? Regards, Hans >>> PS: Please send all follow-up with a cc to the mailing list >>> ("reply-all"). >>>>> On 01/09/2012 05:04 AM, Vidya .H.K wrote: >>>>>> Hi, >>>>>> I am new user to galaxy. I have installed galaxy on the Linux local server >>>>>> for ChIP-seq analysis. While running MACS, an error is flagged >>>>>> "An error occurred running this job: /bin/sh: macs: not found" . >>>>>> I have set the path for macs in /bin. But still the error persists. It >>>>>> would be great if any one help me resolve this problem. >>>>> Hi Vidya >>>>> Is macs executable for the galaxy user (ie the user the galaxy server >>>>> is >>>>> running as) ? >>>>> Regards, Hans >>>>>> Thanks in advance. >>>>>> Regards >>>>>> vidya >>>>>> ___________________________________________________________ Please keep all replies on the list by using "reply all" >>>>>> in your mail client. To manage your subscriptions to this >>>>>> and other Galaxy lists, please use the interface at: >>>>>> http://lists.bx.psu.edu/ >>>>