Hi Hans-Rudolph,
This means you use
Docker pull bgruening/galaxy-stable:latest to get the image?
I just noticed that the “latest” image is 6 weeks old and the other only 9 days…
Anyway, I will try if the problems occur with the old one as well.
Did you ever tried to use Docker for mac in a production mode, if yes any idea how to allow acces from other computers in the network?
Cheers,
Philipp
From: Hans-Rudolf Hotz [mailto:hansrudolf.hotz@fmi.ch] Sent: Wednesday, June 29, 2016 3:50 PM To: Rathert, Philipp, Dr. philipp.rathert@ibc.uni-stuttgart.de Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Docker for Mac
Hi Philipp
I have successfully used "Docker for Mac (beta)” on 10.11.5, but I have always used the traditional location for the image to fetch from: https://index.docker.io/u/bgruening/galaxy-stable/ (i.e just following the excellent recipes on https://github.com/bgruening/docker-galaxy-stable )
and just by coincidence: last night I tried ' http://quay.io/bgruening/galaxy:16.04' quay.io/bgruening/galaxy:16.04' and it didn’t work, but I haven’t investigated why….
Hans-Rudolf
On 29 Jun 2016, at 10:23, Rathert, Philipp, Dr. <philipp.rathert@ibc.uni-stuttgart.de mailto:philipp.rathert@ibc.uni-stuttgart.de > wrote:
Dear all I was wondering if anybody has experience running a galaxy production server using docker for mac. I know it's beta testing at the moment but since the Virtual machine environment gave us such a hard time preserving and managing user data etc. I thought I try it anyway...
However, it seems to be not as easy as expected.
after installation of docker I pull the new docker galaxy image with
docker pull quay.io/bgruening/ http://quay.io/bgruening/ galaxy:16.04
When I start a test container with net=host
docker run -it --net=host quay.io/bgruening/ http://quay.io/bgruening/ galaxy:16.04)
I am not able to connect to the galaxy web app and get this error:
Starting ProFTP
proftpd: ERROR (abnormal termination)
and
==> /home/galaxy/logs/slurmd.log <==
[2016-06-29T08:13:41.440] error: Unable to resolve "moby": Unknown host
[2016-06-29T08:13:41.440] error: Unable to establish control machine address
I then tried to use Kinematik and at least I get the web app running. However, I didn't find the option to change the network settings to net=host
And I have the additional problem that I have to assign ownership rights to the folders in /export and I get the following error:
chown -R postgres:postgres postgres:postgres /postgresql
chown: postgres: illegal group name
I know these are many issues, but maybe one of you has experience with this and could provide some help.
Thanks a lot,
Philipp
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