Hello Zipho,
Per your request I have reviewed the linked issues and created a list of things I think can be done that are relatively easy to improve the current situation here https://github.com/galaxyproject/galaxy/issues/2980#issuecomment-250777589. There are a lot bigger things that need to be done as well - but they are very high level and they seem to be fairly controversial and relatively difficult to implement.
-John
On Thu, Sep 29, 2016 at 4:03 AM, Ziphozakhe Mashologu zipho@sanbi.ac.za wrote:
Hi All
In using Galaxy, I would like to be able to keep track of the input dataset name down the analysis chain.
This is a similar if not the same issue raised by Eric in https://github.com/galaxyproject/galaxy/issues/2752, to which he proposes in the context of a workflow that, "the rename dataset action should support usage of all the dataset names from Input Dataset elements, rather than just input files to the particular tool." Please see the issue for more details.
There are other similar issues raise scattered all over regarding the same issue:
Enhancements:
- Ability to name datasets using the element identifier:
https://github.com/galaxyproject/galaxy/issues/2006 2. Ability to define the collection name in a workflow: https://github.com/galaxyproject/galaxy/issues/2398 3. Name datasets according to both collection name and element identifier: https://github.com/galaxyproject/galaxy/issues/2140, https://github.com/galaxyproject/galaxy/issues/2023
Bug Fixes:
- Renaming using the input from paired dataset collections:
https://github.com/galaxyproject/galaxy/issues/1675, https://github.com/galaxyproject/galaxy/issues/1686
I have created a github issue regarding the above, in effort to try and consolidate all these related above issues.
https://github.com/galaxyproject/galaxy/issues/2980
Can we use the above issue to discuss the best approach on these issues, point out work being done on the area and perhaps define clear milestones for each?
Galaxy Devs please provide me some guidance to best tackle this. (particularly of tracking the input dataset names along the analysis chain).
Thanks, Zipho
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