details: http://www.bx.psu.edu/hg/galaxy/rev/54be726b7711 changeset: 2389:54be726b7711 user: Dan Blankenberg dan@bx.psu.edu date: Thu Apr 30 15:37:37 2009 -0400 description: Fix for HID incrementing by two when importing from a library.
2 file(s) affected in this change:
lib/galaxy/model/__init__.py lib/galaxy/web/controllers/library.py
diffs (44 lines):
diff -r ff2fca65799e -r 54be726b7711 lib/galaxy/model/__init__.py --- a/lib/galaxy/model/__init__.py Thu Apr 30 11:07:34 2009 -0400 +++ b/lib/galaxy/model/__init__.py Thu Apr 30 15:37:37 2009 -0400 @@ -777,8 +777,7 @@ self.copied_from_library_dataset_dataset_association = copied_from_library_dataset_dataset_association self.library_dataset = library_dataset self.user = user - def to_history_dataset_association( self, target_history, parent_id=None ): - hid = target_history._next_hid() + def to_history_dataset_association( self, target_history, parent_id = None, add_to_history = False ): hda = HistoryDatasetAssociation( name=self.name, info=self.info, blurb=self.blurb, @@ -790,12 +789,13 @@ deleted=self.deleted, parent_id=parent_id, copied_from_library_dataset_dataset_association=self, - history=target_history, - hid=hid ) + history=target_history ) hda.flush() hda.metadata = self.metadata #need to set after flushed, as MetadataFiles require dataset.id + if add_to_history and target_history: + target_history.add_dataset( hda ) for child in self.children: - child_copy = child.to_history_dataset_association( target_history=target_history, parent_id=hda.id ) + child_copy = child.to_history_dataset_association( target_history = target_history, parent_id = hda.id, add_to_history = False ) if not self.datatype.copy_safe_peek: hda.set_peek() #in some instances peek relies on dataset_id, i.e. gmaj.zip for viewing MAFs hda.flush() diff -r ff2fca65799e -r 54be726b7711 lib/galaxy/web/controllers/library.py --- a/lib/galaxy/web/controllers/library.py Thu Apr 30 11:07:34 2009 -0400 +++ b/lib/galaxy/web/controllers/library.py Thu Apr 30 15:37:37 2009 -0400 @@ -175,9 +175,7 @@ history = trans.get_history() for ldda_id in ldda_ids: ldda = trans.app.model.LibraryDatasetDatasetAssociation.get( ldda_id ) - hda = ldda.to_history_dataset_association( target_history=history ) - history.add_dataset( hda ) - hda.flush() + hda = ldda.to_history_dataset_association( target_history=history, add_to_history = True ) history.flush() msg = "%i dataset(s) have been imported into your history" % len( ldda_ids ) return trans.response.send_redirect( web.url_for( controller='library',