Dear Nate, Yes, you are right, for some reason, we couldn't cd to the folder. It is fixed and I restart the Galaxy. The only thing is that it needs about 10 minutes to start. I remembered it is a little fast last week. Is there any problem? Anyway, Galaxy works. Thanks, Yan On Mon, Feb 14, 2011 at 8:49 AM, Nate Coraor <nate@bx.psu.edu> wrote:
Yan Luo wrote:
Dear Nate,
Thanks for your quick response, I got "sever error". and just killed the process. When I ran activate as follows and can't active it:
kangtu@dscbc-compute:~$ . /home/kangtu/data/tools/galaxy-dist/galaxy_env/bin/activate bash: /home/kangtu/data/tools/galaxy-dist/galaxy_env/bin/activate: Stale NFS file handle kangtu@dscbc-compute:~$
It looks like the NFS mount on which Galaxy lives has gone bad, possibly due to an error with the NFS server. I suggest contacting a local system administrator for assistance.
--nate
Any suggestion will be appreciate.
Best Wishes,
Yan
On Mon, Feb 14, 2011 at 8:43 AM, Nate Coraor <nate@bx.psu.edu> wrote:
Yan Luo wrote:
Dear Nate,
I have a new problem, last week, I restarted the Galaxy, but it
well.
This morning, I found I can't start it from browser, but when I check "ps auxwww|grep python", I still find it is running, what is problem?
What happens when you try to connect via a browser? Is an error message displayed? Connection timeout?
kangtu 24468 0.3 0.0 961592 104296 pts/30 Sl+ Feb11 13:43
worked python
./scripts/paster.py serve universe_wsgi.ini
If you reconnect to your screen session and take a look at the output from the Galaxy server, there may be error message displayed which would explain what the problem is.
--nate
Looking forward to hearing from you.
Best Wishes,
yan
On Fri, Feb 11, 2011 at 11:16 AM, Yan Luo <luomails@gmail.com>
wrote:
Dear Nate,
I just used "screen", and restarted the galaxy, it works. It is
perfect,
and I also found that some features can't be used before, when I restart it, everything is fine.
Have a wonderful weekend!
Best Wishes,
Yan