Hey Greg, Sorry about the delay on this over the holidays. I see what you're working with now. If you install your customizations in a portable manner in /mnt/galaxyData that should be safe and we'll make sure to provide a smooth migration path going forward should that change. Only 'galaxy' type clusters will have /mnt/galaxy and data only clusters should continue to work just fine with /mnt/galaxyData. -Dannon On Mon, Dec 30, 2013 at 1:33 PM, greg <margeemail@gmail.com> wrote:
Just following up on this. So it's ok to do all of my customizations in /mnt/galaxyData?
Or am I doing something wrong, and I need to figure out how to boot up into a version that has /mnt/galaxy?
Thanks again,
Greg
Yes, I just launched it a few hours ago.
I just went here and filled out the form: https://usegalaxy.org/cloudlaunch
I chose "data cluster" when prompted and enter 5GB.
On Fri, Dec 20, 2013 at 2:48 PM, Dannon Baker <dannon.baker@gmail.com> wrote:
And is this a new instance you've just launched? If so, how'd you launch it?
On Fri, Dec 20, 2013 at 2:37 PM, greg <margeemail@gmail.com> wrote:
Here's what I'm seeing:
ubuntu@ip-10-182-195-79:/$ ls / bin boot dev etc export home initrd.img lib lib64 lost+found media mnt opt proc root run sbin selinux srv sys tmp usr var vmlinuz ubuntu@ip-10-182-195-79:/$ ls mnt cm galaxyData lost+found transient_nfs ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/ export files tmp upload_store
On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker <dannon.baker@gmail.com> wrote:
Does /mnt/galaxy exist, and does it have all of the expected galaxy components? /mnt/galaxyData might exist, but it should be either
empty
or a symlink to /mnt/galaxy if I remember correctly.
If you're launching your cluster from usegalaxy.org/cloudlaunch, you should always be using the latest stuff.
On Fri, Dec 20, 2013 at 2:13 PM, greg <margeemail@gmail.com> wrote:
Thanks. I was wrong before. I actually do see a /mnt/galaxyData.
Should I not being seeing that? Am I not on cloudman 2.0?
-Greg
On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker <
dannon.baker@gmail.com>
wrote: > With the Cloudman 2.0 release, the galaxyData and galaxyTools volumes > have > been merged to a single 'galaxy' volume. /mnt/galaxy is now your > single > persistent (by default, at least) volume, so, if you install your > tool > to > here and share everything should work as expected. > > -Dannon > > > On Fri, Dec 20, 2013 at 1:53 PM, greg <margeemail@gmail.com> wrote: >> >> Hi guys, >> >> I just launched an instance from https://usegalaxy.org/cloudlaunch >> and >> chose "data cluster" when prompted. >> >> Everything seems to have gone ok, but when I ssh in, I don't see >> /mnt/galaxyData >> >> >> Background: >> >> Basically we have a bioinformatics tool that needs SGE to run. So I >> want to install it on a galaxy cloud instance and then provide
On Fri, Dec 20, 2013 at 2:49 PM, greg <margeemail@gmail.com> wrote: the
>> share string to other researchers. >> >> I did this successfully a year or two ago by installing it to >> /mnt/galaxyData. >> >> Thanks, >> >> Greg >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ > >