18 May
2012
18 May
'12
2:40 p.m.
I get an error from Galaxy indicating that it is trying to find a file name $genbank_filename.gff, I.e. the ${genbank_filename} is not expanded.
Is there any way to deal with this situation?
Not currently. This is a nice idea and should be done, but it's not obvious to implement. I'll try to take a look in the near future.
Of course the other option is to create a tiny wrapper around bp_genbank2gff that takes an output filename argument and does the renaming...
Yes, the whole point of from_work_dir is to alleviate the need to write wrappers to deal with hard-coded outputs files. Best, J.