On Jan 25, 2012, at 10:37 AM, Leandro Hermida wrote:
In the latest galaxy-dist version when running the system cleanup commands in the
documented order I get an error when running the purge_datasets.sh script:
Traceback (most recent call last):
File "./scripts/cleanup_datasets/cleanup_datasets.py", line 518, in
if __name__ == "__main__": main()
File "./scripts/cleanup_datasets/cleanup_datasets.py", line 116, in main
purge_datasets( app, cutoff_time, options.remove_from_disk, info_only =
options.info_only, force_retry = options.force_retry )
File "./scripts/cleanup_datasets/cleanup_datasets.py", line 353, in
_purge_dataset( app, dataset, remove_from_disk, info_only = info_only )
File "./scripts/cleanup_datasets/cleanup_datasets.py", line 478, in
print "Error attempting to purge data file: ", dataset.file_name, "
error: ", str( exc )
line 651, in get_file_name
assert self.object_store is not None, "Object Store has not been initialized for
dataset %s" % self.id
AssertionError: Object Store has not been initialized for dataset 58
What could be going wrong?
This is a bug that cropped up when we added the object store backend to Galaxy. I'm
working on a fix which should be available in the next release of Galaxy. Sorry for the
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