Hi,
Do you still have the config/galaxy.ini.sample file unchanged ?
We observed this message when some .sample are missing or were modified.
Gildas
----------------------------------------------------------------- Gildas Le Corguillé - Bioinformatician/Bioanalyste
Plateform ABiMS (Analyses and Bioinformatics for Marine Science) http://abims.sb-roscoff.fr http://abims.sb-roscoff.fr/
Member of the Workflow4Metabolomics project http://workflow4metabolomics.org http://workflow4metabolomics.org/
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Le 3 mars 2016 à 07:31, Léo Biscassi leo.biscassi@gmail.com a écrit :
Hi, the command that you suggested not working, the same output is presented. I tested with the following commands:
sudo planemo test /home/leobiscassi/programs/galaxy/tools/planemo-tutorial/seqtk_seq.xml --galaxy_root=/home/leobiscassi/programs/galaxy
sudo planemo test /home/leobiscassi/programs/galaxy/tools/planemo-tutorial/seqtk_seq.xml
What is the influence of xUnit file in the process? I did the question because the warning message showing "Cannot locate xUnit report option for tests - update Galaxy for more detailed breakdown".
P.S.: My Galaxy instance is the latest stable version.
Best regards,
On Thu, Mar 3, 2016 at 2:53 AM Björn Grüning <bjoern.gruening@gmail.com mailto:bjoern.gruening@gmail.com> wrote: Hi,
maybe I'm mistaken something, its way to early here ... but you need to specify a path to the tool you want to test.
For example:
planemo test /foo/bar/foo.xml
or to a directory full of tools.
planemo test /foo/bar
Hope this helps, Bjoern
Am 03.03.2016 um 04:48 schrieb Léo Biscassi:
Hi Folks, I tried follow this tutorial [1], but I have problems in execute the command "planemo t --galaxy_root=/home/leobiscassi/programs/galaxy" for perform functional tests, any suggestion? Bellow some images about this problem:
imagem1.jpg *Figure 1: *Command
imagem2.jpg *Figure 2:* Error
imagem3.jpg *Figure 3: *Galaxy Path
Planemo's version is 0.23.0.
[1] https://planemo.readthedocs.org/en/latest/writing_standalone.html https://planemo.readthedocs.org/en/latest/writing_standalone.html
P.S: The command is utilized for same tool presented in tutorial.
Att.
*Léo Biscassi* Facebook - https://pt-br.facebook.com/lbiscassi https://pt-br.facebook.com/lbiscassi Linkedin - https://br.linkedin.com/in/leobiscassi https://br.linkedin.com/in/leobiscassi Skype - biscassi.leo Twitter - https://twitter.com/leobiscassi https://twitter.com/leobiscassi
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