Hi all,
Could someone explain to me what the "Error opening galaxy.json file" logging means (set at DEBUG level so perhaps not really an error). I've seen this when my development Galaxy is running normally (here I have the logging set to show the DEBUG output) but also for the Galaxy unit tests.
e.g.
galaxy.jobs.manager DEBUG 2013-01-25 10:37:45,645 (2) Job assigned to handler 'main' galaxy.jobs DEBUG 2013-01-25 10:37:50,899 (2) Working directory for job is: /mnt/galaxy/galaxy-central/database/job_working_directory/000/2 galaxy.jobs.handler DEBUG 2013-01-25 10:37:50,900 dispatching job 2 to local runner galaxy.jobs.handler INFO 2013-01-25 10:37:51,175 (2) Job dispatched galaxy.jobs.runners.local DEBUG 2013-01-25 10:37:51,286 Local runner: starting job 2 galaxy.jobs.runners.local DEBUG 2013-01-25 10:37:51,820 executing: python /mnt/galaxy/galaxy-central/tools/protein_analysis/tmhmm2.py "$NSLOTS" /tmp/tmp6hm9Td/database/files/000/dataset_1.dat /tmp/tmp6hm9Td/database/files/000/dataset_2.dat galaxy.jobs.runners.local DEBUG 2013-01-25 10:38:11,967 execution finished: python /mnt/galaxy/galaxy-central/tools/protein_analysis/tmhmm2.py "$NSLOTS" /tmp/tmp6hm9Td/database/files/000/dataset_1.dat /tmp/tmp6hm9Td/database/files/000/dataset_2.dat galaxy.tools DEBUG 2013-01-25 10:38:12,265 Error opening galaxy.json file: [Errno 2] No such file or directory: '/mnt/galaxy/galaxy-central/database/job_working_directory/000/2/galaxy.json' galaxy.jobs DEBUG 2013-01-25 10:38:12,411 job 2 ended
Thanks,
Peter