5:16 p.m.
Hi, John,thanks for your answer. I installed svnversion, and compiled/installed
ATLAS/Blas/ LAPACK. I still got error messages like ATLAS/Blas/ LAPACK are not found.
I could install package_numpy_1_9 by using galaxy main tool shed. There is something wrong
with package_numpy_1_7 on my environment.
Cheers,
Yu
di29her
wang@lrz.de<mailto:wang@lrz.de>
On 15 Dec 2014, at 16:12, John Chilton
<jmchilton@gmail.com<mailto:jmchilton@gmail.com>> wrote:
Looks like this - https://github.com/clarete/curdling/issues/19
I think you somehow need to install the package svn on your machine - if you have root on
that machine the command might be something like "sudo zypper install svn" or
may it is "sudo zypper install subversion". If you don't have root on the
machine I would ask the operating system maintainer or try to compile and install svn
locally and make it available to Galaxy.
Hope this helps,
-John
On Fri, Dec 12, 2014 at 7:14 AM, Wang, Yu
<Yu.Wang@lrz.de<mailto:Yu.Wang@lrz.de>> wrote:
Hi, I am running galaxy on SLSE11, when I tried to install bumpy 1.7.1, I got the
following error.
Can anyone point what goes wrong here?
Error Running from numpy source directory.
/bin/sh: svnversion: command not found
/home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1494:
UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
/home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1503:
UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
warnings.warn(BlasNotFoundError.__doc__)
/home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1506:
UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
warnings.warn(BlasSrcNotFoundError.__doc__)
/bin/sh: svnversion: command not found
/home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1408:
UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
/home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1419:
UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
warnings.warn(LapackNotFoundError.__doc__)
/home/wang/galaxy-dist/database/tmp/tmp-toolshed-mtdMR9ITC/numpy-1.7.1/numpy/distutils/system_info.py:1422:
UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
warnings.warn(LapackSrcNotFoundError.__doc__)
error: must supply either home or prefix/exec-prefix -- not both
Cheers,
Yu
di29her
wang@lrz.de<mailto:wang@lrz.de>
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