Hi Peter, No I am not using that option. It is currently set to false in my universe_wgsi.ini file. It says it is a new feature and not recommended, so I didn't mess with it. Thanks Ravi On Mar 11, 2014, at 11:27 AM, Peter Cock p.j.a.cock@googlemail.com wrote:
Hi Ravi,
Could you reply to the list?
And actually I meant do you have "use_tasked_jobs = True" in your universe_wsgi.ini file which is linked to the special XML tag <parallelism> in some Galaxy Tools for splitting jobs. Sorry, that was unclear of me.
Peter
On Tue, Mar 11, 2014 at 6:24 PM, Ravi Alla ravi.alla@berkeley.edu wrote:
Peter, This is a Centos linux cluster using PBS Torque job manager. By parallelization are you referring to multiple job handlers? No I am not. I barely set this server up and it is in its most basic form so far. I will add options for multiple web servers and runners once I get things working soundly. Thanks Ravi On Mar 11, 2014, at 11:07 AM, Peter Cock p.j.a.cock@googlemail.com wrote:
On Tue, Mar 11, 2014 at 5:57 PM, Ravi Alla ravi.alla@berkeley.edu wrote:
Hi All, I've been able to submit jobs to the cluster through galaxy, it works great. But when the job is in queue to run (it is gray in the galaxy history pane) and I cancel the job, it still remains in queue on the cluster. Why does this happen? How can I delete the jobs in queue as well? I tried qdel <job_id> as galaxy user but it says I am not authenticated to delete the job. Any help would be greatly appreciated. Thanks Ravi.
What kind of cluster is it? e.g. SGE?
Are you using task splitting (parallelization)?
Peter