Hi folks, Today after perform some tests with conda on galaxy 16.07 the follow message was returned in my terminal:
"*Conda dependency seemingly installed but failed to build job environment.* "
The error occurs when *build_isolated_environment()* function is call. Below some variable values:
*is_installed* = *True* *job_directory* = */home/leobiscassi/programs/galaxy/job_work_dir/000/17* *env_path* = */home/leobiscassi/programs/galaxy/job_work_dir/000/17/conda-env* *exit_code* = *127*
Analyzing inside of the *build_isolated_environment()*, the *exec_create() *function is executed because *path* variable ( */home/leobiscassi/programs/galaxy/job_work_dir/000/17/conda-env*) don't exists, the command executed by *exec_create* is showed below:
*deps/_conda/bin/conda create -y --unknown --offline --prefix /home/leobiscassi/programs/galaxy/job_work_dir/000/17/conda-env --file ./database/tmp/jobdepsIGslWfe2bd2345d2ec1bb4aeb81211183570bae7db28a3bea4f7ff9e8e75074719a7ee/__mgltools@1.5.6
/dev/null*
Some important values:
*env* = *{'HOME': 'deps/_conda', 'CONDARC': '/home/leobiscassi/programs/galaxy/deps/_condarc'}*
The command return is '*/bin/sh: 1: deps/_conda/bin/conda: not found*', but the binary exist. Anyone can help me with this?
Thanks in advance.