details: http://www.bx.psu.edu/hg/galaxy/rev/62c7260e7fb7 changeset: 3217:62c7260e7fb7 user: Nate Coraor nate@bx.psu.edu date: Thu Jan 07 16:20:04 2010 -0500 description: Fix accidentally committed fastx tool configs
diffstat:
tools/fastx_toolkit/fastq_to_fasta.xml | 2 +- tools/fastx_toolkit/fastx_collapser.xml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-)
diffs (22 lines):
diff -r 7d3667e8e415 -r 62c7260e7fb7 tools/fastx_toolkit/fastq_to_fasta.xml --- a/tools/fastx_toolkit/fastq_to_fasta.xml Thu Jan 07 15:45:15 2010 -0500 +++ b/tools/fastx_toolkit/fastq_to_fasta.xml Thu Jan 07 16:20:04 2010 -0500 @@ -1,6 +1,6 @@ <tool id="cshl_fastq_to_fasta" name="FASTQ to FASTA"> <description>converter</description> - <command>gunzip -cf $input | fastq_to_fasta -Q 33 $SKIPN $RENAMESEQ -o $output -v </command> + <command>gunzip -cf $input | fastq_to_fasta $SKIPN $RENAMESEQ -o $output -v </command>
<inputs> <param format="fastq" name="input" type="data" label="FASTQ Library to convert" /> diff -r 7d3667e8e415 -r 62c7260e7fb7 tools/fastx_toolkit/fastx_collapser.xml --- a/tools/fastx_toolkit/fastx_collapser.xml Thu Jan 07 15:45:15 2010 -0500 +++ b/tools/fastx_toolkit/fastx_collapser.xml Thu Jan 07 16:20:04 2010 -0500 @@ -1,6 +1,6 @@ <tool id="cshl_fastx_collapser" name="Collapse"> <description>sequences</description> - <command>zcat -f '$input' | fastx_collapser -Q 33 -v -o '$output' </command> + <command>zcat -f '$input' | fastx_collapser -v -o '$output' </command>
<inputs> <param format="fastqsolexa,fasta" name="input" type="data" label="Library to collapse" />