I don't think the two things are connected which each other. In the logs of our local installation we see once in a while, lines like:
File "/usr/lib64/python2.6/socket.py", line 303, in flush self._sock.sendall(buffer(data, write_offset, buffer_size)) error: [Errno 32] Broken pipe
but without any errors or failed jobs associated. We consider those as harmless, temporary glitches in the web server part of galaxy.
Sorry, not much help...
Just one question for clarification, which might help others (with more cloud experience) to jump in: do the failed jobs occur randomly with any tool? or are they all coming from the same tool?
On 07/25/2016 12:48 PM, Ulf Schaefer wrote:
Certain jobs fail on my cloud Galaxy instance with the error message in the subject line. No stderr or stdout is produced by the tool, at least it's not accessible from Galaxy. However the data seems to be there, in so far that I can view it (clicking on the eye) and download it using the floppy disk icon.
The only thing I see (repeatedly) in my Galaxy logs is this:
Exception happened during processing of request from ('127.0.0.1', 46619) Traceback (most recent call last): File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1085, in process_request_in_thread self.finish_request(request, client_address) File "/usr/lib/python2.7/SocketServer.py", line 334, in finish_request self.RequestHandlerClass(request, client_address, self) File "/usr/lib/python2.7/SocketServer.py", line 657, in __init__ self.finish() File "/usr/lib/python2.7/SocketServer.py", line 716, in finish self.wfile.close() File "/usr/lib/python2.7/socket.py", line 283, in close self.flush() File "/usr/lib/python2.7/socket.py", line 307, in flush self._sock.sendall(view[write_offset:write_offset+buffer_size]) error: [Errno 32] Broken pipe
Does this look familiar to anyone?
Thanks very much for any input Ulf
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