Hi Peter,
The problem is that I have multiple repositories in my repository_dependency file ... but they need to be installed in a specific order. I can't seem to get galaxy to install them in the correct order.
Ira
PS: Sorry about the totally irrelevant subject line ... I've changed it.
On 05/03/2013, at 9:01 PM, Peter Cock p.j.a.cock@googlemail.com wrote:
On Tue, Mar 5, 2013 at 6:49 AM, Ira Cooke iracooke@gmail.com wrote:
Hi,
I've just uploaded a set of updates to my proteomics tools on the toolshed. These contain my best attempt to implement automatic dependency installation ... and for the most part it seems to work.
I have encountered the following issues though
(1) I don't see any way to ensure that one repository_dependency is installed before all others. In my case this is important because I have an installer package (galaxy_protk) which needs to be installed before other package installs will work.
For example .. try installing
I think in this case you just need to use a repository_dependencies.xml file (but note currently this only lets you point at other repositories in the same Tool Shed instance, i.e. http://toolshed.g2.bx.psu.edu/ here): http://wiki.galaxyproject.org/DefiningRepositoryDependencies
Peter