On Thu, Oct 11, 2012 at 6:14 PM, Jim Johnson johns198@umn.edu wrote:
Checking to see if there is any interest in including a parameter option to select outputs for cuffdiff, potentially including a composite output and a cummeRbund sqlite database.
Hi JJ,
I'm highly interested in something like this, I even tried in the past to come up with a solution[1], but I gave up when I was hit hard by the complexity of the current cuffdiff output you talk about it. I think your solution sounds great and I will make sure to test your demo code as soon as possible.
[1]http://testtoolshed.g2.bx.psu.edu/repos/cjav/cummerbund
Thanks, Carlos