I forgot to say that Galaxy installs those dependencies (tool_dependencies or conda) beside your host system. That will not interfere with your host libraries, binaries ...
Gildas
----------------------------------------------------------------- Gildas Le Corguillé - Bioinformatician/Bioanalyste
Plateform ABiMS (Analyses and Bioinformatics for Marine Science) http://abims.sb-roscoff.fr http://abims.sb-roscoff.fr/
Member of the Workflow4Metabolomics project http://workflow4metabolomics.org http://workflow4metabolomics.org/
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Le 27 juil. 2016 à 17:41, Gildas Le Corguillé lecorguille@sb-roscoff.fr a écrit :
Hi Tony,
Yes, Galaxy will install a whole functional python version. At runtime, Galaxy source some env.sh files according to the different requirements and the bunch of requirement dependencies.
Using the tool_dependencies, indeed, Galaxy sets almost a dedicated environment for the tools.
The purpose is the same with the new system Conda. But in this case, Conda can create environment natively
I hope I answered to your question.
Gildas
Gildas Le Corguillé - Bioinformatician/Bioanalyste
Plateform ABiMS (Analyses and Bioinformatics for Marine Science) http://abims.sb-roscoff.fr http://abims.sb-roscoff.fr/
Member of the Workflow4Metabolomics project http://workflow4metabolomics.org http://workflow4metabolomics.org/
Station Biologique de Roscoff - UPMC/CNRS - FR2424 Place Georges Teissier 29680 Roscoff FRANCE tel: +33 2 98 29 23 81
Le 27 juil. 2016 à 17:16, Tony Schreiner <anthony.schreiner@bc.edu mailto:anthony.schreiner@bc.edu> a écrit :
I have galaxy server 15.10 running on Ubuntu 14.04, which has python 2.7.5.
I was in the process of adding matplotlib from the toolchest. It has a dependency on package_python_2_7.
Before proceeding, I'd like to understand a bit how that works. Does that install a whole new python, and how then does it get invoked?
Tony Schreiner ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ https://lists.galaxyproject.org/
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