Hello Brani,
I don't know if you have tried to run other tools on your file, or if you have tried this same operation on the public Main instance at http://usegalaxy.org, but my guess is that you will run into the same issue.
One path is to convert the UNICODE characters to ASCII. This prior Q&A covers the details. The included link to the Trello card is still active and can be followed & up-voted: http://dev.list.galaxyproject.org/Tool-Error-Failure-Preparing-Job-td4660512...
There is a longer work-around included in this more recent thread (near the end, the dist John is talking about went out Feb 10th). I wouldn't be able to help with the details of implementation if you run into problems, but John possibly could, if this is something you want to try. http://dev.list.galaxyproject.org/error-with-unicode-output-td4662783.html
Hopefully one of these works out for you,
Jen Galaxy team
On 2/21/14 8:04 AM, Cantarel, Brandi L. wrote:
Hi, I am testing my newly installed galaxy instance. When I try to use a simple tool like fastq_to_fasta, I get the following error: UnicodeEncodeError: 'latin-1' codec can't encode character u'\ufffd' in position 693: ordinal not in range(256) Anyone know how I can fix this?
Thanks! Brandi
Brandi Cantarel, PhD Bioinformatics Research Scientist Baylor Institute for Immunology Research Baylor Health Care System 214-820-9064 (office) ------------------------------------------------------------------------ This e-mail may contain confidential and/or privileged information. This information is intended only for the use of the individual(s) and entity(ies) to whom it is addressed. If you are the intended recipient, further disclosures are prohibited without proper authorization. If you are not the intended recipient (or have received this e-mail in error) please notify the sender immediately and destroy this e-mail. Any unauthorized copying, disclosure or distribution of the material in this e-mail is strictly forbidden and possibly a violation of federal or state law and regulations. Baylor Health Care System, its subsidiaries, and affiliates hereby claim all applicable privileges related to this information. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/