We have a local copy of MAF files for hg18, and I modified the ~/tool-data/maf_index.loc file to list the full paths to the .maf files. After restarting Galaxy, the MAF Source and Type are listed in the MAF Coverage Stats tool, as expected. However, after trying to run with an interval file, it gives an error "The MAF source specified (17_WAY_MULTIZ_hg18) appears to be invalid".
Is there somewhere else I need to edit to get to the locally cached MAF files?
David Hoover Helix Systems Staff http://helix.nih.gov