This is release_15.07 (last commit listed is 39f6730e5f50b54f372b8c1e17d86d8936b5899f) and ncbi_blast_plus c16c30e9ad5b. So no, its not an old Galaxy. On 21 July 2015 at 17:37, Peter Cock <p.j.a.cock@googlemail.com> wrote:
Hi Peter v H,
Which version of Galaxy are you running?
Which version of ncbi_blast_tools are you running? (ideally down to the ToolShed revision)
My guess is that since this used to be .extra_files_path perhaps your Galaxy is too old for .files_path to work?
https://github.com/peterjc/galaxy_blast/commit/2bbbf7f361ada20bf1b5bd777fae6...
Thanks,
Peter C.
Hi there
I'm trying to use the blastp tools from the ncbi_blast_tools, but every time I try and run a job I get the following error:
Traceback (most recent call last): File "/net/ datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/jobs/runners/__init__.py ", line 163, in prepare_job job_wrapper.prepare() File "/net/ datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/jobs/__init__.py ", line 859, in prepare self.command_line, self.extra_filenames, self.environment_variables = tool_evaluator.build() File "/net/ datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/tools/evaluation.py ", line 422, in build raise e NotFound: cannot find 'files_path' while searching for 'db_opts.histdb.files_path'
This is happening when expanding the tool template. The BLAST db in in
On Tue, Jul 21, 2015 at 3:08 PM, Peter van Heusden <pvh@sanbi.ac.za> wrote: the
history (thus the reference to histdb) but why can it not find this attribute?
Peter
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