Hi, Thank you very much for your help. I have resolved the problem. I had install MACS version 1.3 instead of MACS version 1.4. Now the tool is working fine.
On 01/24/2012 06:19 AM, Vidya .H.K wrote:
Hi, Actually I am not computer expert as well. I have just started to work in this area. so I am not able to figure out how to solve this problem. I request you to elaborate on what you meant in your previous mail.
by simulating a complete command line I meant the following:
You look how "macs_wrapper.py" is called by galaxy. This is written in the "macs_wrapper.xml" and then you execute the same command line.
But I just realize, you have re-submitted the same question in a different e-mail thread again (unfortunately, again without a subject line).....
Thanks in advance
As I wrote in my previous e-mail: "Please send all follow-up with a cc
to the mailing list ("reply-all")."
In order to debug you situation you need to simulate a complete commandline, the same Galaxy is doing. Regards, Hans On 01/23/2012 05:35 AM, Vidya .H.K wrote:
Hi, Sorry for delayed reply. When I execute "macs_wrapper.py" on command line, I get the following error. python macs_wrapper.py File "<stdin>", line 1 python macs_wrapper.py Thanks in advance
On 01/10/2012 06:31 AM, Vidya .H.K wrote:
Hi, I think macs is exceutable with galaxy user.
what happens if you execute "macs_wrapper.py" on the command line?
Regards, Hans
PS: Please send all follow-up with a cc to the mailing list ("reply-all").
> On 01/09/2012 05:04 AM, Vidya .H.K wrote: >> Hi, >> I am new user to galaxy. I have installed galaxy on the Linux >> local
server
>> for ChIP-seq analysis. While running MACS, an error is flagged >> "An error occurred running this job: /bin/sh: macs: not >> found"
.
>> I have set the path for macs in /bin. But still the error >> persists. It >> would be great if any one help me resolve this problem. > Hi Vidya > Is macs executable for the galaxy user (ie the user the galaxy
server
> is > running as) ? > Regards, Hans >> Thanks in advance. >> Regards >> vidya >> ___________________________________________________________ Please
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