Hi Nikhil,
Have a look at https://toolshed.g2.bx.psu.edu/view/devteam/data_manager_fetch_genome_dbkeys... to add a new genome/fasta. Once you have the genome entry, then you can use additional Data Manager to make tool specific (bwa, samtools, etc) indexes.
Thanks for using Galaxy,
Dan
On Apr 2, 2015, at 5:41 AM, Nikhil Joshi najoshi@ucdavis.edu wrote:
Of course this would be for a local install of galaxy.
On Thu, Apr 2, 2015 at 2:29 AM, Nikhil Joshi najoshi@ucdavis.edu wrote: Hi all,
Is it possible to use a DataManager (or anything) to allow a user (or admin) to upload their genome of choice and have it be indexed and be used as a built-in/cached genome *without* having to go on the command-line? I.e., only using the Galaxy interface?
- Nik.
-- Nikhil Joshi Bioinformatics Analyst/Programmer UC Davis Bioinformatics Core http://bioinformatics.ucdavis.edu/ najoshi -at- ucdavis -dot- edu 530.752.2698 (w)
-- Nikhil Joshi Bioinformatics Analyst/Programmer UC Davis Bioinformatics Core http://bioinformatics.ucdavis.edu/ najoshi -at- ucdavis -dot- edu 530.752.2698 (w) ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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