Dear there,
I'd like to convert genebank flat file to GFF. So, I am trying to install this tool shed [cid:2d047a8e-cfc4-4e3e-97b4-5225f8dde128] to my local galaxy. But I got an error as below.
Does it associated with dependencies? I see it needs these ? [cid:51e76e29-daa7-4f92-a9a8-3687d969f3e6] . How can I check if I have all these?
?[cid:53e1eb6a-f27d-471c-8122-0d575a63c4f2]
Also, I see there is the same tool in this website https://galaxy.cbio.mskcc.org/root?tool_id=fml_gbk2gff (see below). It should be also galaxy but I need to register an account for it. Do you know what is the relationship between this website and the galaxy? BTW, I received an error when I used the tool on this website. I think if they are same tool, the galaxy team should know the reason for it. Here is the error as below.
GFF Toolkit (v0.1) GROOMING PROGRAMS Examine_GFFhttps://galaxy.cbio.mskcc.org/tool_runner?tool_id=gff_examine file Parent-Child relations FeatureScanhttps://galaxy.cbio.mskcc.org/tool_runner?tool_id=gff_available_limits gives an overview about GFF feature content CONVERTER PROGRAMS GTF_to_GFF3https://galaxy.cbio.mskcc.org/tool_runner?tool_id=fml_gtf2gff3 converter BED_to_GFF3https://galaxy.cbio.mskcc.org/tool_runner?tool_id=fml_bed2gff converter GFF3_to_BEDhttps://galaxy.cbio.mskcc.org/tool_runner?tool_id=fml_gff2bed converter GBK-to-GFFhttps://galaxy.cbio.mskcc.org/tool_runner?tool_id=fml_gbk2gff converter
?[cid:56985bc0-77c2-4719-b0f9-d4b36aeb03c0]
Thanks!
Best,
Xiaofei