Dear all, I installed a local galaxy using the latest codebase yesterday. During the startup, the loading of 3 tool wrappers are failed: epigraph.xml, epigraph_test.xml, access_libraries.xml. Similar errors were reported in http://www.mail-archive.com/galaxy-dev@lists.bx.psu.edu/msg01839.html Have other people experienced the same problem? Any suggested solutions? Thanks, Leon ==== paster.log below === ... galaxy.tools DEBUG 2011-07-22 16:02:47,084 Loaded tool: hbvar 1.0.0 galaxy.tools DEBUG 2011-07-22 16:02:47,088 Loaded tool: fix_errors 1.0.0 galaxy.tools DEBUG 2011-07-22 16:02:47,089 Loading section: Send Data galaxy.tools ERROR 2011-07-22 16:02:47,089 error reading tool from path: data_destination/epigraph.xml Traceback (most recent call last): File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 77, in load_tool tool = self.load_tool( os.path.join( self.tool_root_dir, path ) ) File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 169, in load_tool return ToolClass( config_file, root, self.app ) File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 340, in __init__ self.parse( root ) File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 385, in parse self.interpreter = command.get("interpreter", None) AttributeError: 'NoneType' object has no attribute 'get' galaxy.tools ERROR 2011-07-22 16:02:47,090 error reading tool from path: data_destination/epigraph_test.xml Traceback (most recent call last): File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 77, in load_tool tool = self.load_tool( os.path.join( self.tool_root_dir, path ) ) File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 169, in load_tool return ToolClass( config_file, root, self.app ) File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 340, in __init__ self.parse( root ) File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 385, in parse self.interpreter = command.get("interpreter", None) AttributeError: 'NoneType' object has no attribute 'get' ... galaxy.tools DEBUG 2011-07-22 16:02:50,556 Loading section: SNP/WGA: Data; Filters galaxy.tools DEBUG 2011-07-22 16:02:50,587 Loaded tool: upload1 1.1.3 galaxy.tools ERROR 2011-07-22 16:02:50,587 error reading tool from path: data_source/access_libraries.xml Traceback (most recent call last): File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 77, in load_tool tool = self.load_tool( os.path.join( self.tool_root_dir, path ) ) File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 169, in load_tool return ToolClass( config_file, root, self.app ) File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 340, in __init__ self.parse( root ) File "/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py", line 385, in parse self.interpreter = command.get("interpreter", None) AttributeError: 'NoneType' object has no attribute 'get' ... -- Hailiang (Leon) Mei Netherlands Bioinformatics Center (http://www.nbic.nl/) Skype: leon_mei Mobile: +31 6 41709231