Hello,
I am a new Galaxy learner. I try to master data managers. I have tried to create sacCer2 reference genome following instruction on video http://vimeo.com/74265510. In Data Manager History, it gives a following error:
Traceback (most recent call last): File "/home/uladzimir/shed_tools/ toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_all_fasta/2ebc856bce29/data_manager_fetch_genome_all_fasta/data_manager/data_manager_fetch_genome_all_fasta.py", line 350, in <module> if __name__ == "__main__": main() File "/home/uladzimir/shed_tools/ toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_all_fasta/2ebc856bce29/data_manager_fetch_genome_all_fasta/data_manager/data_manager_fetch_genome_all_fasta.py", line 345, in main REFERENCE_SOURCE_TO_DOWNLOAD[ params['param_dict']['reference_source']['reference_source_selector'] ]( data_manager_dict, params, target_directory, dbkey, sequence_id, sequence_name ) File "/home/uladzimir/shed_tools/ toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_all_fasta/2ebc856bce29/data_manager_fetch_genome_all_fasta/data_manager/data_manager_fetch_genome_all_fasta.py", line 182, in download_from_ucsc ftp = FTP( UCSC_FTP_SERVER ) File "/usr/lib/python2.7/ftplib.py", line 120, in __init__ self.connect(host) File "/usr/lib/python2.7/ftplib.py", line 135, in connect self.sock = socket.create_connection((self.host, self.port), self.timeout) File "/usr/lib/python2.7/socket.py", line 571, in create_connection raise err socket.error: [Errno 110] Connection timed out
Can you please help me?
Thanks Uladzimir