1 Dec
2015
1 Dec
'15
10:53 p.m.
Dear all
I have a Python script that I would like to publish to the tool shed. It has a couple dependencies, all Python modules (argparse, PyVCF, PyYAML). It also needs a Python version 2.7<=X<3, which is not available per default everywhere.
Firstly, how do I specify these dependencies in the tool <requirements> tag?
And secondly, once I have a correct set of tool definition files with tests and test data, how do I best get it onto the tool shed?
I had a look through the wiki and the planemo documentation. Unfortunately how to handle these dependencies did not become immediately obvious (to me).
Thanks for any pointers and sorry if this has been answered some place I did not look.
Cheers Ulf
--
Ulf Schaefer, PhD
Bioinformatics Scientist
Bioinformatics Unit - Infectious Disease Informatics
National Infection Service
Public Health England
61 Colindale Ave, London NW9 5EQ
ulf.schaefer@phe.gov.uk
http://www.gov.uk/phe
Protecting and improving the nation’s health
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