hello folks,
i had little difficulty setting up the balanced proxies and ldap auth, thanks to your wiki and mailing list. but now i'm running into an odd problem i'm hope you fellas can help shine some light on...
i set up multiple galaxy sites running as different users (in the same group), with each site submitting to a different sge cluster (based on users sge env vars), but all use the same postgresql db and a common database/ folder.
i get an error when i try to add a dataset in the library admin view. however i can add folders, no problem.
Error - <class 'sqlalchemy.orm.exc.UnmappedInstanceError'>: Class '__builtin__.NoneType' is not mapped URL: https://galaxy.jgi-psf.org/main/library_common/upload_library_dataset?librar... File '/house/tooldirs/galaxy/galaxy-main/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', line 143 in __call__ File '/house/tooldirs/galaxy/galaxy-main/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ File '/house/tooldirs/galaxy/galaxy-main/lib/galaxy/web/framework/middleware/remoteuser.py', line 102 in __call__ File '/house/tooldirs/galaxy/galaxy-main/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ File '/house/tooldirs/galaxy/galaxy-main/lib/galaxy/web/framework/base.py', line 126 in __call__ File '/house/tooldirs/galaxy/galaxy-main/lib/galaxy/web/controllers/library_common.py', line 803 in upload_library_dataset File '/house/tooldirs/galaxy/galaxy-main/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/orm/scoping.py', line 127 in do File '/house/tooldirs/galaxy/galaxy-main/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/orm/session.py', line 925 in refresh UnmappedInstanceError: Class '__builtin__.NoneType' is not mapped
when i use the upload tool, it submits without error ("Your upload has been queued..."), the files appears in the database/files folder (permissions okay), but no history item is created and no error message appears in the logs.
any hints or suggestions would be greatly appreciated!
thanks again, ed
p.s. do you foresee any problems with the setup i'm trying? what about collisions of job ids since all sites use a common db and each site uses a different sge cluster?
p.p.s. does this part of my universe_wsgi.ini.main.job look right? i'm not sure what the implications of these settings are.
[filter:proxy-prefix]
use = egg:PasteDeploy#prefix prefix = /main
[app:main]
filter-with = proxy-prefix cookie_path = /main cookie_prefix = main
i have similar files for other sites besides 'main' (e.g. test, etc.)