What kind of database backend are you using (postgres, myql, or the default sqlite)? If you are running many jobs - I would definitely encourage using postgres. -John On Sun, Mar 13, 2016 at 2:48 PM, Zuzanna K. Filutowska <platyna@man.poznan.pl> wrote:
Dear All,
I am running newest version of Galaxy with PBS and I am observing strange behaviour: some jobs that were finished on the queue system are still shown as running on Galaxy Web interface. Communication with PBS server seems to work fine all the time. Nothing interesting seems to be in logs despite debug being on: sqlalchemy.pool.QueuePool ERROR 2016-03-13 11:36:02,544 Error closing cursor Any ideas, what can be a problem?
--
Pozdrawiam,
-- Zuzanna K. Filutowska, HPC Systems Administrator Poznan Supercomputing and Networking Center Institute of Bioorganic Chemistry Polish Academy of Sciences Seize the day boys! Make your lifes extraordinary! --John Keating
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