Howdy,
One of our users is running the eXpress package under NGS: RNA Analysis -> eXpress -- galaxy/dist/tools/ngs_rna/express_wrapper.*
I noticed the syntax for express_wrapper.xml has the following: <requirement type="binary">eXpress</requirement> any reason why it was set to that, as opposed to: <requirement type="package">eXpress</requirement>
In our setup, we need to source the env.sh file for express to setup the correct environmental variables. Changing from binary to package has not solved this and re-running the job never sources our env.sh file.
What am I doing wrong?
My tool dependency directory looks like so: galaxy/dist/tool_dependency/eXpress/ |---default --> 1.3.0 |----1.3.0/env.sh
Thanks, -Adam
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/
University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu