Re: [galaxy-dev] Where is the output of tools stored in Galaxy?

Thanks. I hope it would be more simple. Like by just changing one line code of the tophat_wrapper.xml with the new path. Are you telling me that, is it not possible to change the path of output of tophat2 simply and access the data from the history at the same time?

On Thu, Dec 27, 2012 at 11:00 AM, Hans-Rudolf Hotz hrh@fmi.ch wrote:

Please keep all replies on the list by using "reply all"!

You can write a wrapper around tophat2 and redirect the output to any directory you want - as long as galaxy has write access to the directory. However, the output will no longer be accessible as a history item.

Regards, Hans

On 12/27/2012 11:19 AM, Sachit Adhikari wrote:

...

Hi Hans,

Oh yes it is stored in database/files. What I wanted to know was if I can change the output path of one or two tools. Let's say if I want to change the path of tophat2, what should I do?

Thanks,

Sachit

On Thu, Dec 27, 2012 at 9:38 AM, Hans-Rudolf Hotz <hrh@fmi.ch mailto:hrh@fmi.ch> wrote:

Hi Sachit


They are stored in ~/database/files/

and you can change it by changing the value for "file_path" in the
'universe_wsgi.ini' file.

Regardd, Hans




On 12/26/2012 11:40 AM, Sachit Adhikari wrote:

    Hello Everyone,

    *Merry Christmas and Happy New Year*
    *

    *
    I was wondering where are the output of the tools stored in the
    machine
    where the galaxy is hosted? And, can I change the path of the
    output of
    the tools?

    Thanks,

    Sachit




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