http://wiki.galaxyproject.org/Admin/Tools/Tool%20Dependencies On Wed, Jun 5, 2013 at 6:19 PM, Sarah Maman <sarah.maman@toulouse.inra.fr>wrote:
Hello,
Some Galaxy tools failed to import rpy module and displays the following message:
Traceback (most recent call last): File "/usr/local/bioinfo/src/**galaxy/galaxy-dist/tools/**plotting/histogram.py", line 5, in <module> from rpy import * ImportError: No module named rpy
For instance, the tool "Regrouping" (tools/stats/grouping.py) have been refactored in 2011 by Kanwei Li to use numpy instead of rpy. And this tool runs on my local instance of Galaxy. But I would like to be able use rpy module instead of refactor the others tools.
Could you, please, help me to understand why the eggs ' import does not allow the use of rpy module? How to debug these tools?
Thnaks in advance, Sarah
-- --*-- Sarah Maman INRA - LGC - SIGENAE http://www.sigenae.org/ Chemin de Borde-Rouge - Auzeville - BP 52627 31326 Castanet-Tolosan cedex - FRANCE Tel: +33(0)5.61.28.57.08 Fax: +33(0)5.61.28.57.53 --*--
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