Hi,
I just updated galaxy, and now I seem to be unable to view the contents of the files.
So i'm able to upload, and can work with them and see the attributes.
If however I want to open them ('the eye' on the left), I get an error (as do my collegues)
I checked on the full path and the file is there.
permission on the file:
-rw-r--r-- 1 galaxy galaxy 16 mrt 1 12:10 dataset_140.dat
nginx vhost
## # Galaxy ##
upstream galaxy_app { server 127.0.0.1:8080; }
proxy_next_upstream off;
server { client_max_body_size 10G; # ... other server stuff ... location / { proxy_pass http://galaxy_app; proxy_set_header X-Forwarded-Host $host; proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; }
location /static { alias /home/galaxy/Software/galaxy/static; expires 24h;
}
location /static/style { alias /home/galaxy/Software/galaxy/static/style/blue; expires 24h; }
location /static/scripts { alias /home/galaxy/Software/galaxy/static/scripts; }
location /favicon.ico { alias /home/galaxy/Software/galaxy/static/favicon.ico; }
location /robots.txt { alias /home/galaxy/Software/galaxy/static/robots.txt; }
# serve static content for visualization and interactive environment plugins location ~ ^/plugins/(?<plug_type>.+?)/(?<vis_name>.+?)/static/(?<static_file>.*?)$ { alias /home/galaxy/Software/galaxy/config/plugins/$plug_type/$vis_name/static/$static_file; }
location /_x_accel_redirect/ { internal; alias /; }
location ~ .php$ { fastcgi_pass 127.0.0.1:9000; include /etc/nginx/conf.d/*.conf; include /etc/nginx/sites-enabled/*;
fastcgi_intercept_errors on; error_page 404 /error/404.php; } }
I would guess a permission error of some kind but I seem unable to find it.
Nginx spits out:
2017/03/01 17:23:39 [error] 28783#0: *1457 open() "/usr/share/nginx/htmltrue/home/galaxy/Software/galaxy/database/files/000/dataset_14 0.dat" failed (2: No such file or directory), client: 172.19.40.126, server: , request: "GET /datasets/32d48e3506ae8cf7/display/?previ ew=True HTTP/1.1", upstream: "http://127.0.0.1:8080/datasets/32d48e3506ae8cf7/display/?preview=True", host: "172.19.32.42", referrer: "http://172.19.32.42/"
the file is in home/galaxy/Software/galaxy/database/files/000/dataset_140.dat
but the folder /usr/share/nginx/htmltrue does not exists...
Any help on this one?
Best regards,
Pieter