I can't see the data at ucsc when I upload a bam file and try to display it.
The track arrives at ucsc.
I see GET /display_application/... and 200 and bytes in the httpd/access_log
I see GET /display_application/... in the paster.log
But I don't see the seq reads at the ucsc browser.
Some background information:
I am setting up our local galaxy server.
The server is redhat 5.
The IP is external and whether firewall is up or down is immaterial in
The galaxy install is running at localhost:8080.
There is the default redhat apache running in front of galaxy with the
rewrite rules enabled for static and all traffic to port 80.
Apache security is not enabled (yet).
The dedicated galaxy user and group is running galaxy.