Re: [galaxy-dev] Blast+: new feature filter/mask... by taxid before job in one task

Hi Peter, We edited the ncbi_blastn_wrapper.xml (attachment) a little bit as you can see and created a taxid_name.loc file for testing by our own. This is what we were thinking of in a very simple way. But if the list spreads out we would like to have textbox for pre-selection above the drop-down-menu like it is in the "edit Attributes" menu if it is possible... Regards, Thomas -----Ursprüngliche Nachricht----- Von: Peter Cock [mailto:p.j.a.cock@googlemail.com] Gesendet: Donnerstag, 13. Juni 2013 11:59 An: Berner, Thomas Cc: galaxy-dev(a)lists.bx.psu.edu Betreff: Re: [galaxy-dev] Blast+: new feature filter/mask... by taxid before job in one task On Wed, Jun 12, 2013 at 11:45 AM, Berner, Thomas <thomas.berner(a)jki.bund.de&gt; wrote: Hi Thomas, Full support allowing making your own database with taxid support will be more complicated - but using databases setup via the *.loc file (e.g. a downloaded copy of the NR database) ought not to be too complicated. I think we just need to add another integer parameter under the advanced options to set the -window_masker_taxid value. Would that be enough for your needs? I wrote the NCBI BLAST+ wrappers but this is starting to turn into a team effort. There is a lot of other work in progress on extending the Galaxy BLAST+ wrappers further - I'm setting up a meeting with the other people already working on this during the GCC2013 - perhaps this should be a listed BoF session? http://wiki.galaxyproject.org/Events/GCC2013/BoF Regards, Peter