Ryan Golhar wrote:
In my local instance of Galaxy, I'm trying to download the BAM and BAI file from the tool SAM-to-BAM. I see the links for downloading the Dataset and bam_index.
BTW - I'm running Safari on Mac OS X.
When I download the Dataset, I get the BAM file. When I download the bam_index, it gets renamed to Galaxy13-[SAM-to-BAM_on...].bam_index.html
The error is the extension, .bam_index.html. This should be .bam.bai. The BAM file gets saved correctly with .bam.
Well, I got rid of the .html in the most recent changeset, 5615:8d5850e45538. bam_index is an artifact of the metadata filetype and will less simple to force to bai on download, so I've opened an issue here:
https://bitbucket.org/galaxy/galaxy-central/issue/566/
--nate
I check the sam-to-bam XML wrapper but can't determine where this filename comes from or how to fix it. Has anyone else run into this?
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